Variant report

Variant	rs73091029
Chromosome Location	chr1:212085718-212085719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212074801..212076576-chr1:212084701..212087247,2	MCF-7	breast:
2	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10494945	1.00[AMR][1000 genomes]
rs10494946	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1343736	0.83[AMR][1000 genomes]
rs17018161	1.00[AMR][1000 genomes]
rs17018191	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56945865	1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs60083191	1.00[AMR][1000 genomes]
rs61511331	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091010	1.00[AMR][1000 genomes]
rs73091020	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091021	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091026	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091032	0.90[AFR][1000 genomes]
rs73091035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212079600-212087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:212080400-212087600	Enhancers	Fetal Intestine Large	intestine
3	chr1:212080800-212087000	Enhancers	Fetal Intestine Small	intestine
4	chr1:212081800-212085800	Enhancers	Liver	Liver
5	chr1:212082400-212086600	Enhancers	A549	lung
6	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
7	chr1:212084000-212085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:212084000-212086000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr1:212084000-212086000	Enhancers	HepG2	liver
10	chr1:212084200-212085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:212084200-212085800	Enhancers	Stomach Mucosa	stomach
12	chr1:212084200-212090800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:212084400-212085800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:212084400-212086000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr1:212084800-212086600	Enhancers	Duodenum Mucosa	Duodenum
16	chr1:212084800-212089200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr1:212084800-212089800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:212084800-212090800	Weak transcription	Pancreas	Pancrea
19	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
20	chr1:212085000-212089000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr1:212085000-212090600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:212085200-212085800	Enhancers	HMEC	breast
23	chr1:212085200-212086000	Flanking Active TSS	Hela-S3	cervix
24	chr1:212085200-212086000	Bivalent Enhancer	Osteobl	bone
25	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
26	chr1:212085600-212085800	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr1:212085600-212085800	Enhancers	NH-A	brain
28	chr1:212085600-212090600	Weak transcription	Rectal Mucosa Donor 29	rectum

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