Variant report

Variant	rs10494945
Chromosome Location	chr1:212077037-212077038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10494946	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs1343736	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17018161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17018191	1.00[AMR][1000 genomes]
rs17042028	1.00[AMR][1000 genomes]
rs56945865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs60083191	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511331	1.00[AMR][1000 genomes]
rs73091010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091020	1.00[AMR][1000 genomes]
rs73091021	1.00[AMR][1000 genomes]
rs73091023	1.00[AMR][1000 genomes]
rs73091026	0.83[AMR][1000 genomes]
rs73091029	1.00[AMR][1000 genomes]
rs73091035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212074400-212078400	Enhancers	Fetal Intestine Small	intestine
2	chr1:212074400-212078800	Enhancers	Fetal Intestine Large	intestine
3	chr1:212074600-212077200	ZNF genes & repeats	GM12878-XiMat	blood
4	chr1:212076200-212080000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:212076200-212080800	Weak transcription	Esophagus	oesophagus
6	chr1:212076200-212083600	Weak transcription	Pancreas	Pancrea
7	chr1:212076800-212077200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr1:212077000-212077200	Enhancers	Colonic Mucosa	Colon
9	chr1:212077000-212077400	Enhancers	Adipose Nuclei	Adipose
10	chr1:212077000-212077400	Flanking Active TSS	Liver	Liver
11	chr1:212077000-212077400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr1:212077000-212077400	Enhancers	Small Intestine	intestine
13	chr1:212077000-212077600	Enhancers	Stomach Mucosa	stomach
14	chr1:212077000-212078000	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:212077000-212078000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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