Variant report

Variant	rs61511331
Chromosome Location	chr1:212084071-212084072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212067506..212069441-chr1:212082442..212085014,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10494945	1.00[AMR][1000 genomes]
rs10494946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1343736	0.83[AMR][1000 genomes]
rs17018161	1.00[AMR][1000 genomes]
rs17018191	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56945865	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs60083191	1.00[AMR][1000 genomes]
rs73091010	1.00[AMR][1000 genomes]
rs73091020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091026	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091032	0.92[AFR][1000 genomes]
rs73091035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212079600-212087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:212080400-212087600	Enhancers	Fetal Intestine Large	intestine
3	chr1:212080800-212087000	Enhancers	Fetal Intestine Small	intestine
4	chr1:212081000-212085000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:212081800-212085800	Enhancers	Liver	Liver
6	chr1:212082400-212084200	Enhancers	Adipose Nuclei	Adipose
7	chr1:212082400-212086600	Enhancers	A549	lung
8	chr1:212082600-212085000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:212082800-212084400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
11	chr1:212083400-212085400	Enhancers	Colonic Mucosa	Colon
12	chr1:212083600-212084200	Enhancers	Pancreas	Pancrea
13	chr1:212083600-212084600	Enhancers	Esophagus	oesophagus
14	chr1:212083600-212084800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:212083600-212084800	Enhancers	Brain Anterior Caudate	brain
16	chr1:212083600-212084800	ZNF genes & repeats	GM12878-XiMat	blood
17	chr1:212083600-212085400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr1:212084000-212084400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:212084000-212084400	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:212084000-212084800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:212084000-212084800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:212084000-212084800	Enhancers	Small Intestine	intestine
23	chr1:212084000-212085200	Enhancers	Hela-S3	cervix
24	chr1:212084000-212085600	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr1:212084000-212085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:212084000-212086000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr1:212084000-212086000	Enhancers	HepG2	liver

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