Variant report

Variant	rs73091020
Chromosome Location	chr1:212078383-212078384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10494945	1.00[AMR][1000 genomes]
rs10494946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1343736	0.83[AMR][1000 genomes]
rs17018161	1.00[AMR][1000 genomes]
rs17018191	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56945865	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs60083191	1.00[AMR][1000 genomes]
rs61511331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091010	1.00[AMR][1000 genomes]
rs73091021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091026	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091032	0.92[AFR][1000 genomes]
rs73091035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212074400-212078400	Enhancers	Fetal Intestine Small	intestine
2	chr1:212074400-212078800	Enhancers	Fetal Intestine Large	intestine
3	chr1:212076200-212080000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:212076200-212080800	Weak transcription	Esophagus	oesophagus
5	chr1:212076200-212083600	Weak transcription	Pancreas	Pancrea
6	chr1:212077200-212082600	Weak transcription	Colonic Mucosa	Colon
7	chr1:212077400-212078400	Enhancers	Liver	Liver
8	chr1:212077400-212082400	Weak transcription	Adipose Nuclei	Adipose
9	chr1:212078000-212082400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:212078000-212082400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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