Variant report

Variant	rs73091026
Chromosome Location	chr1:212083785-212083786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10494945	0.83[AMR][1000 genomes]
rs10494946	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17018161	0.83[AMR][1000 genomes]
rs17018191	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17042028	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56945865	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60083191	0.83[AMR][1000 genomes]
rs61511331	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091010	0.83[AMR][1000 genomes]
rs73091020	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091021	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091023	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091029	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091032	0.92[AFR][1000 genomes]
rs73091035	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212079600-212087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:212080400-212087600	Enhancers	Fetal Intestine Large	intestine
3	chr1:212080800-212087000	Enhancers	Fetal Intestine Small	intestine
4	chr1:212081000-212085000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:212081800-212085800	Enhancers	Liver	Liver
6	chr1:212082400-212083800	Enhancers	Duodenum Mucosa	Duodenum
7	chr1:212082400-212084000	Flanking Active TSS	HepG2	liver
8	chr1:212082400-212084200	Enhancers	Adipose Nuclei	Adipose
9	chr1:212082400-212086600	Enhancers	A549	lung
10	chr1:212082600-212085000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr1:212082800-212084400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
13	chr1:212083400-212085400	Enhancers	Colonic Mucosa	Colon
14	chr1:212083600-212084200	Enhancers	Pancreas	Pancrea
15	chr1:212083600-212084600	Enhancers	Esophagus	oesophagus
16	chr1:212083600-212084800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:212083600-212084800	Enhancers	Brain Anterior Caudate	brain
18	chr1:212083600-212084800	ZNF genes & repeats	GM12878-XiMat	blood
19	chr1:212083600-212085400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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