Variant report

Variant	rs6971459
Chromosome Location	chr7:137869846-137869847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13231925	0.84[AFR][1000 genomes]
rs2465922	0.95[ASN][1000 genomes]
rs2635526	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2718127	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797815	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137867000-137871400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:137867200-137871400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:137867200-137871400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:137867400-137871200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:137867400-137871400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:137869400-137871600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:137869800-137873000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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