Variant report

Variant	rs13231925
Chromosome Location	chr7:137876515-137876516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13224318	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1906889	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34288409	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6971459	0.84[AFR][1000 genomes]
rs71541382	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71541383	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7783814	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7797815	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137880200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:137874800-137878600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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