Variant report

Variant	rs71541382
Chromosome Location	chr7:137887611-137887612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11764095	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11771184	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13221468	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13221578	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13221616	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13224318	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13228035	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13228776	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13230213	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13231925	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13234577	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1387585	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1906889	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34230550	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34288409	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34446043	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34458644	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4142644	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4142645	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57177181	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57628314	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59635163	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6944836	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6955437	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71309397	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71541383	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73731511	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7780731	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7783814	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792003	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7794151	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7797681	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7797842	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7806666	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137880400-137888600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:137880400-137893800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:137882200-137887800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:137886600-137888000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:137887400-137888600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:137887600-137888400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr7:137887600-137888600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:137887600-137888600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:137887600-137889600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:137887600-137891000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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