Variant report

Variant	rs13224318
Chromosome Location	chr7:137881516-137881517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137848014..137850255-chr7:137879119..137881766,2	MCF-7	breast:
2	chr7:137857220..137860058-chr7:137880639..137882161,2	K562	blood:

Variant related genes	Relation type
ENSG00000252820	Chromatin interaction
ENSG00000225559	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11764095	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11771184	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13221468	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13221578	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13221616	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13228035	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13228776	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13230213	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13231925	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13234577	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1387585	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1906889	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34230550	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34288409	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34446043	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34458644	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4142644	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4142645	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57177181	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57628314	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59635163	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6944836	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6955437	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71309397	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71541382	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71541383	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73731511	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7780731	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7783814	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7792003	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7794151	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7797681	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7797842	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7806666	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137878000-137881600	Enhancers	Lung	lung
3	chr7:137878600-137884000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:137879400-137883400	Enhancers	Placenta	Placenta
5	chr7:137879600-137882800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr7:137879800-137882800	Enhancers	Stomach Mucosa	stomach
7	chr7:137880200-137882800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:137880400-137882000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:137880400-137882000	Weak transcription	Fetal Stomach	stomach
10	chr7:137880400-137882000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:137880400-137888600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:137880400-137893800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:137880600-137881600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:137881000-137882200	Weak transcription	Gastric	stomach
15	chr7:137881000-137882200	Enhancers	Pancreas	Pancrea
16	chr7:137881200-137881600	Enhancers	Fetal Lung	lung
17	chr7:137881400-137881600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr7:137881400-137881600	Enhancers	Liver	Liver
19	chr7:137881400-137882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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