Variant report

Variant	rs6971533
Chromosome Location	chr7:14300052-14300053
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17710027	0.80[AMR][1000 genomes]
rs35198760	0.81[AMR][1000 genomes]
rs36095426	0.81[AMR][1000 genomes]
rs38283	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38284	0.80[AMR][1000 genomes]
rs38285	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs38289	0.80[AMR][1000 genomes]
rs38290	0.80[AMR][1000 genomes]
rs40540	0.80[AMR][1000 genomes]
rs6949452	0.86[JPT][hapmap]
rs6966405	0.80[AMR][1000 genomes]
rs6976083	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71548080	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14297400-14300600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:14299400-14300400	Enhancers	Fetal Brain Male	brain
3	chr7:14299800-14300200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:14299800-14300400	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links