Variant report
| Variant | rs6976083 |
|---|---|
| Chromosome Location | chr7:14300459-14300460 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10263173 | 0.82[AMR][1000 genomes] |
| rs17710027 | 0.83[AMR][1000 genomes] |
| rs35198760 | 0.82[AMR][1000 genomes] |
| rs36095426 | 0.82[AMR][1000 genomes] |
| rs38261 | 0.81[AMR][1000 genomes] |
| rs38263 | 0.82[AMR][1000 genomes] |
| rs38264 | 0.82[AMR][1000 genomes] |
| rs38265 | 0.82[AMR][1000 genomes] |
| rs38266 | 0.81[AMR][1000 genomes] |
| rs38267 | 0.82[AMR][1000 genomes] |
| rs38268 | 0.82[AMR][1000 genomes] |
| rs38269 | 0.81[AMR][1000 genomes] |
| rs38271 | 0.82[AMR][1000 genomes] |
| rs38272 | 0.80[AMR][1000 genomes] |
| rs38275 | 0.82[AMR][1000 genomes] |
| rs38276 | 0.82[AMR][1000 genomes] |
| rs38277 | 0.82[AMR][1000 genomes] |
| rs38278 | 0.82[AMR][1000 genomes] |
| rs38283 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs38284 | 0.83[AMR][1000 genomes] |
| rs38285 | 0.83[AMR][1000 genomes] |
| rs38286 | 0.81[AMR][1000 genomes] |
| rs38287 | 0.82[AMR][1000 genomes] |
| rs38289 | 0.83[AMR][1000 genomes] |
| rs38290 | 0.83[AMR][1000 genomes] |
| rs40450 | 0.82[AMR][1000 genomes] |
| rs40540 | 0.83[AMR][1000 genomes] |
| rs4719396 | 0.82[AMR][1000 genomes] |
| rs4721316 | 0.81[AMR][1000 genomes] |
| rs6966405 | 0.83[AMR][1000 genomes] |
| rs6971533 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs71548080 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14297400-14300600 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 2 | chr7:14300200-14303000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
