Variant report

Variant	rs697201
Chromosome Location	chr12:104069957-104069958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1101617	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11111712	0.84[ASN][1000 genomes]
rs11111713	0.84[ASN][1000 genomes]
rs35682809	0.85[ASN][1000 genomes]
rs697209	0.81[ASN][1000 genomes]
rs703639	0.81[ASN][1000 genomes]
rs703640	0.82[ASN][1000 genomes]
rs703641	0.82[ASN][1000 genomes]
rs703643	0.81[ASN][1000 genomes]
rs703644	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs703645	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104064000-104072000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr12:104064400-104071000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:104064600-104071200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:104064800-104070200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:104064800-104070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:104065800-104075200	Enhancers	Fetal Intestine Large	intestine
7	chr12:104066600-104070400	Weak transcription	Colonic Mucosa	Colon
8	chr12:104066800-104074600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr12:104067800-104071200	Weak transcription	HMEC	breast
10	chr12:104068000-104071200	Weak transcription	Pancreas	Pancrea
11	chr12:104068000-104073800	Weak transcription	Spleen	Spleen
12	chr12:104068400-104070600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr12:104068400-104073200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr12:104068800-104070200	Weak transcription	Fetal Intestine Small	intestine
15	chr12:104069600-104070000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr12:104069600-104071000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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