Variant report

Variant	rs6975027
Chromosome Location	chr7:78051567-78051568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12532329	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12532363	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12533284	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17150719	0.91[EUR][1000 genomes]
rs17150722	0.82[EUR][1000 genomes]
rs28573255	0.88[EUR][1000 genomes]
rs56309024	0.81[EUR][1000 genomes]
rs62468772	0.87[EUR][1000 genomes]
rs62468774	0.88[EUR][1000 genomes]
rs62468775	0.99[EUR][1000 genomes]
rs6466213	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6959624	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6972004	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6975990	0.89[EUR][1000 genomes]
rs6977890	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6978526	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78045000-78052400	Enhancers	Brain Anterior Caudate	brain
2	chr7:78047000-78051600	Enhancers	Brain Cingulate Gyrus	brain
3	chr7:78047200-78051600	Enhancers	Brain Angular Gyrus	brain
4	chr7:78047200-78051600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr7:78047200-78052000	Enhancers	Brain Hippocampus Middle	brain
6	chr7:78049600-78066200	Weak transcription	Ovary	ovary
7	chr7:78051400-78051600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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