Variant report

Variant	rs12533284
Chromosome Location	chr7:78052544-78052545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485886	0.80[YRI][hapmap]
rs12532329	1.00[CEU][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12532363	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17150719	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17150722	0.81[EUR][1000 genomes]
rs28573255	0.87[EUR][1000 genomes]
rs62468772	0.86[EUR][1000 genomes]
rs62468774	0.87[EUR][1000 genomes]
rs62468775	1.00[EUR][1000 genomes]
rs6466213	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6959624	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6972004	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6975027	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6975990	0.90[EUR][1000 genomes]
rs6977890	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6978526	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810620	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78049600-78066200	Weak transcription	Ovary	ovary
2	chr7:78051600-78056200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:78051600-78064200	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78052000-78053200	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:78052400-78064200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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