Variant report

Variant	rs7810620
Chromosome Location	chr7:78052199-78052200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10246357	1.00[CHB][hapmap]
rs10953544	1.00[CHB][hapmap]
rs11766914	1.00[CHB][hapmap]
rs11771624	1.00[CHB][hapmap]
rs11982997	1.00[CHB][hapmap]
rs11983137	1.00[CHB][hapmap]
rs12532329	1.00[CEU][hapmap]
rs12533284	0.93[CEU][hapmap]
rs60620266	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6466209	1.00[JPT][hapmap]
rs6466213	1.00[CEU][hapmap]
rs6955103	1.00[CHB][hapmap]
rs6959624	0.93[CEU][hapmap];0.84[YRI][hapmap]
rs7793461	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78045000-78052400	Enhancers	Brain Anterior Caudate	brain
2	chr7:78049600-78066200	Weak transcription	Ovary	ovary
3	chr7:78051600-78056200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78051600-78064200	Weak transcription	Brain Substantia Nigra	brain
5	chr7:78052000-78053200	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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