Variant report

Variant	rs11983137
Chromosome Location	chr7:78023769-78023770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10246357	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10267588	0.87[YRI][hapmap]
rs10953544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761763	1.00[EUR][1000 genomes]
rs11762411	1.00[EUR][1000 genomes]
rs11764975	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767241	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769134	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11771624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971039	0.93[AFR][1000 genomes]
rs11982997	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2018323	0.94[ASN][1000 genomes]
rs35196485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73701314	0.98[EUR][1000 genomes]
rs7791201	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7793461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797465	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7810620	1.00[CHB][hapmap]
rs881446	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78010000-78024600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
4	chr7:78018800-78023800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:78018800-78024400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:78019000-78023800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:78019000-78023800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:78019000-78026600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:78019000-78026800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:78022600-78024200	Enhancers	Brain Angular Gyrus	brain
11	chr7:78022800-78024200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:78022800-78024200	Enhancers	Brain Substantia Nigra	brain
13	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:78023200-78028000	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:78023600-78023800	Enhancers	Left Ventricle	heart
16	chr7:78023600-78025600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:78023600-78025800	Enhancers	Osteobl	bone
18	chr7:78023600-78026000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:78023600-78028600	Weak transcription	Ovary	ovary

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