Variant report

Variant	rs11762411
Chromosome Location	chr7:78008513-78008514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10953544	0.95[EUR][1000 genomes]
rs11761763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11764975	1.00[EUR][1000 genomes]
rs11765053	1.00[EUR][1000 genomes]
rs11766914	1.00[EUR][1000 genomes]
rs11767241	1.00[EUR][1000 genomes]
rs11769134	1.00[EUR][1000 genomes]
rs11771624	1.00[EUR][1000 genomes]
rs11982997	1.00[EUR][1000 genomes]
rs11983137	1.00[EUR][1000 genomes]
rs35196485	1.00[EUR][1000 genomes]
rs6955103	1.00[EUR][1000 genomes]
rs73701313	0.92[AMR][1000 genomes]
rs73701314	0.98[EUR][1000 genomes]
rs7793461	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78008000-78008800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:78008000-78009200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:78008200-78009000	Enhancers	HSMMtube	muscle
4	chr7:78008200-78009000	Enhancers	NH-A	brain
5	chr7:78008200-78009200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:78008200-78009200	Enhancers	Osteobl	bone
7	chr7:78008400-78009000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:78008400-78009200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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