Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10246357	0.88[ASN][1000 genomes]
rs10953544	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761763	1.00[EUR][1000 genomes]
rs11762411	1.00[EUR][1000 genomes]
rs11764975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765053	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769134	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11771624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971039	0.82[AFR][1000 genomes]
rs11982997	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983137	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2018323	0.94[ASN][1000 genomes]
rs35196485	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955103	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73701314	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7791201	0.94[ASN][1000 genomes]
rs7793461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797465	0.82[AFR][1000 genomes]
rs881446	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:77993800-78001200	Weak transcription	Brain Anterior Caudate	brain
3	chr7:78000800-78001600	Weak transcription	Brain Germinal Matrix	brain
4	chr7:78001000-78001600	Enhancers	Fetal Brain Male	brain
5	chr7:78001000-78003200	Weak transcription	Fetal Brain Female	brain

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