Variant report

Variant	rs7791201
Chromosome Location	chr7:78025817-78025818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10246357	0.83[ASN][1000 genomes]
rs10269990	1.00[CHB][hapmap]
rs10953544	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11764975	0.94[ASN][1000 genomes]
rs11765053	0.94[ASN][1000 genomes]
rs11766914	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11767241	0.94[ASN][1000 genomes]
rs11769134	0.88[ASN][1000 genomes]
rs11771624	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11982997	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11983137	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1860537	1.00[CHB][hapmap]
rs2018323	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399145	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35196485	0.94[ASN][1000 genomes]
rs62461542	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62461543	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6944339	1.00[CHB][hapmap]
rs6955103	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6967955	1.00[CHB][hapmap]
rs6967983	1.00[CHB][hapmap]
rs7793461	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs881446	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
3	chr7:78019000-78026600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78019000-78026800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:78023200-78028000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:78023600-78026000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:78023600-78028600	Weak transcription	Ovary	ovary
9	chr7:78023800-78026000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:78024200-78026800	Weak transcription	Brain Substantia Nigra	brain
11	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
12	chr7:78025000-78027600	Enhancers	Brain Anterior Caudate	brain
13	chr7:78025000-78028800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:78025200-78026000	Enhancers	Fetal Heart	heart
15	chr7:78025400-78027600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:78025600-78026800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:78025600-78027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:78025600-78027600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:78025600-78028000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:78025800-78026800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:78025800-78027400	Weak transcription	H9 Cell Line	embryonic stem cell

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