Variant report

Variant	rs1860537
Chromosome Location	chr7:78048441-78048442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10269990	1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17150696	0.80[ASW][hapmap];0.81[CEU][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17417090	0.85[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6944339	0.93[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6947316	0.83[YRI][hapmap]
rs6947591	0.80[YRI][hapmap]
rs6967955	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6967983	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7791201	1.00[CHB][hapmap]
rs7802689	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1860537	CCL24	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78045000-78052400	Enhancers	Brain Anterior Caudate	brain
2	chr7:78045800-78048600	Weak transcription	Ovary	ovary
3	chr7:78046400-78049200	Weak transcription	Left Ventricle	heart
4	chr7:78047000-78051000	Enhancers	Brain Substantia Nigra	brain
5	chr7:78047000-78051600	Enhancers	Brain Cingulate Gyrus	brain
6	chr7:78047200-78051600	Enhancers	Brain Angular Gyrus	brain
7	chr7:78047200-78051600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:78047200-78052000	Enhancers	Brain Hippocampus Middle	brain
9	chr7:78047600-78049600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:78048200-78050600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:78048400-78048800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:78048400-78049800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:78048400-78049800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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