Variant report

Variant	rs17150696
Chromosome Location	chr7:78048626-78048627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17350367	1.00[CHB][hapmap]
rs17350535	1.00[CHB][hapmap]
rs17417090	0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1860537	0.80[ASW][hapmap];0.81[CEU][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2691543	1.00[CHB][hapmap]
rs6944339	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs6947316	0.83[YRI][hapmap]
rs6947591	0.80[YRI][hapmap]
rs7802689	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78045000-78052400	Enhancers	Brain Anterior Caudate	brain
2	chr7:78046400-78049200	Weak transcription	Left Ventricle	heart
3	chr7:78047000-78051000	Enhancers	Brain Substantia Nigra	brain
4	chr7:78047000-78051600	Enhancers	Brain Cingulate Gyrus	brain
5	chr7:78047200-78051600	Enhancers	Brain Angular Gyrus	brain
6	chr7:78047200-78051600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:78047200-78052000	Enhancers	Brain Hippocampus Middle	brain
8	chr7:78047600-78049600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:78048200-78050600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:78048400-78048800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:78048400-78049800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:78048400-78049800	Enhancers	Brain Germinal Matrix	brain
13	chr7:78048600-78049600	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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