Variant report

Variant	rs17350535
Chromosome Location	chr7:78027059-78027060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12533999	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12536414	0.82[AMR][1000 genomes]
rs17150696	1.00[CHB][hapmap]
rs17350367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415846	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2012593	0.94[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2691543	1.00[CHB][hapmap]
rs34992850	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55761537	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55824893	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59825513	0.83[AMR][1000 genomes]
rs62461472	0.85[AMR][1000 genomes]
rs62461545	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62461546	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62468259	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468763	0.82[AMR][1000 genomes]
rs62468765	0.82[AMR][1000 genomes]
rs62468766	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7782154	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7810316	1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881447	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
3	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:78023200-78028000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:78023600-78028600	Weak transcription	Ovary	ovary
6	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:78025000-78027600	Enhancers	Brain Anterior Caudate	brain
8	chr7:78025000-78028800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:78025400-78027600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:78025600-78027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:78025600-78027600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:78025600-78028000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:78025800-78027400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:78026000-78027400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:78026000-78028400	Weak transcription	Fetal Heart	heart
16	chr7:78026600-78029000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr7:78026800-78027400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:78026800-78029000	Enhancers	Brain Substantia Nigra	brain
19	chr7:78026800-78029400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:78026800-78031400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:78027000-78027800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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