Variant report

Variant	rs62461472
Chromosome Location	chr7:77989245-77989246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12533999	0.81[AMR][1000 genomes]
rs12536414	0.84[AMR][1000 genomes]
rs12539788	0.95[ASN][1000 genomes]
rs17350367	0.83[AMR][1000 genomes]
rs17350535	0.85[AMR][1000 genomes]
rs17415846	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2012593	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34992850	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59825513	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62461545	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62461546	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468763	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468765	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7782154	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7810316	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs881447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:77975600-77992000	Weak transcription	Ovary	ovary
3	chr7:77981600-77994400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:77982000-77990000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:77985400-77989400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:77985600-77998200	Weak transcription	Brain Substantia Nigra	brain
7	chr7:77989200-77990400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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