Variant report

Variant	rs62461546
Chromosome Location	chr7:78012663-78012664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12533999	0.82[AMR][1000 genomes]
rs12536414	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12539788	1.00[ASN][1000 genomes]
rs17350367	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17350535	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17415846	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012593	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34992850	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59825513	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62461472	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62461545	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468259	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468763	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62468765	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7782154	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810316	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs881447	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78010000-78024600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78012200-78013000	Enhancers	Brain Cingulate Gyrus	brain
3	chr7:78012200-78013400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:78012200-78018600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:78012400-78013000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:78012600-78012800	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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