Variant report

Variant	rs62468259
Chromosome Location	chr7:78030168-78030169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78028994..78032808-chr7:78037424..78041086,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12533999	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12536414	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17350367	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350535	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415846	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2012593	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34992850	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55761537	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55824893	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59825513	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62461545	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62461546	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62468763	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62468765	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62468766	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7782154	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7810316	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881447	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78026800-78031400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:78027600-78032200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:78027800-78031800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:78028000-78032000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:78028400-78031200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:78028400-78031800	Enhancers	Fetal Heart	heart
9	chr7:78029000-78030600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:78029000-78034800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
12	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
13	chr7:78029200-78030600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr7:78029400-78030800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:78029400-78031400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:78029400-78031600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:78029800-78030800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr7:78029800-78030800	Active TSS	Aorta	Aorta
20	chr7:78029800-78030800	Active TSS	Right Atrium	heart
21	chr7:78030000-78030800	Active TSS	Right Ventricle	heart
22	chr7:78030000-78031400	Active TSS	Ovary	ovary
23	chr7:78030000-78031800	Enhancers	H9 Cell Line	embryonic stem cell

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