Variant report

Variant	rs12536414
Chromosome Location	chr7:78035001-78035002
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12533999	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350367	0.84[AMR][1000 genomes]
rs17350535	0.82[AMR][1000 genomes]
rs17415846	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17432736	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2012593	0.81[LWK][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes]
rs55761537	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824893	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59825513	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461472	0.84[AMR][1000 genomes]
rs62461545	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62461546	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62468259	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62468763	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468765	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468766	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782154	0.87[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7810316	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs881447	0.88[MEX][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12536414	YWHAG	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
5	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:78031600-78036800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:78031800-78037000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:78032000-78036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:78032000-78036600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:78032000-78036600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:78034800-78035400	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links