Variant report

Variant	rs12533999
Chromosome Location	chr7:78036658-78036659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12536414	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350367	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17350535	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17415846	0.83[AMR][1000 genomes]
rs17432736	1.00[ASN][1000 genomes]
rs2012593	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55761537	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824893	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59825513	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461472	0.81[AMR][1000 genomes]
rs62461545	0.81[AMR][1000 genomes]
rs62461546	0.82[AMR][1000 genomes]
rs62468259	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62468763	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468765	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468766	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810316	0.85[AMR][1000 genomes]
rs881447	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
3	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78031600-78036800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:78031800-78037000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:78035400-78044800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:78036200-78047200	Weak transcription	Brain Angular Gyrus	brain
9	chr7:78036400-78038000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:78036600-78037400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:78036600-78038000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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