Variant report

Variant	rs11771624
Chromosome Location	chr7:78028689-78028690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10246357	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10953544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761763	1.00[EUR][1000 genomes]
rs11762411	1.00[EUR][1000 genomes]
rs11764975	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765053	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766914	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769134	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11982997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2018323	0.94[ASN][1000 genomes]
rs35196485	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73701314	0.98[EUR][1000 genomes]
rs7791201	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7793461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810620	1.00[CHB][hapmap]
rs881446	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
2	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
4	chr7:78025000-78028800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78026600-78029000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:78026800-78029000	Enhancers	Brain Substantia Nigra	brain
7	chr7:78026800-78029400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:78026800-78031400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:78027200-78029200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:78027400-78029000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:78027400-78030000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:78027600-78028800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:78027600-78029200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:78027600-78032200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:78027800-78029200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:78027800-78031800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:78028000-78028800	Enhancers	Brain Hippocampus Middle	brain
18	chr7:78028000-78032000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:78028200-78028800	Enhancers	HSMM	muscle
20	chr7:78028200-78029000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
21	chr7:78028400-78028800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:78028400-78028800	Enhancers	Fetal Brain Male	brain
23	chr7:78028400-78028800	Enhancers	HSMMtube	muscle
24	chr7:78028400-78029000	Enhancers	Brain Anterior Caudate	brain
25	chr7:78028400-78029800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:78028400-78031200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr7:78028400-78031800	Enhancers	Fetal Heart	heart
28	chr7:78028600-78029000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:78028600-78029000	Enhancers	Ovary	ovary

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