Variant report

Variant	rs11766914
Chromosome Location	chr7:78018443-78018444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10246357	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10464619	1.00[AFR][1000 genomes]
rs10953544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761763	1.00[EUR][1000 genomes]
rs11762411	1.00[EUR][1000 genomes]
rs11764975	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765053	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769134	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11771624	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885929	1.00[AFR][1000 genomes]
rs16885947	1.00[AFR][1000 genomes]
rs17147824	1.00[AFR][1000 genomes]
rs17150550	1.00[AFR][1000 genomes]
rs17150560	1.00[AFR][1000 genomes]
rs17150580	1.00[AFR][1000 genomes]
rs17150594	1.00[AFR][1000 genomes]
rs2018323	0.94[ASN][1000 genomes]
rs35196485	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73701314	0.98[EUR][1000 genomes]
rs7791201	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7793461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810620	1.00[CHB][hapmap]
rs881446	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78010000-78024600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78012200-78018600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:78014800-78018600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:78016200-78022600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:78016200-78022600	Weak transcription	Right Atrium	heart
7	chr7:78016200-78022800	Weak transcription	Brain Substantia Nigra	brain
8	chr7:78016600-78018600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:78016800-78018600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
11	chr7:78017600-78018800	Enhancers	Brain Anterior Caudate	brain
12	chr7:78017800-78018800	Enhancers	Brain Hippocampus Middle	brain
13	chr7:78018400-78018800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:78018400-78019000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:78018400-78019000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:78018400-78019000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:78018400-78019000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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