Variant report

Variant	rs16885947
Chromosome Location	chr7:77978285-77978286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10464619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485890	1.00[JPT][hapmap]
rs11765053	1.00[AFR][1000 genomes]
rs11766914	1.00[AFR][1000 genomes]
rs11769134	1.00[AFR][1000 genomes]
rs12670360	1.00[JPT][hapmap]
rs16885929	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885940	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147824	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150527	0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17150545	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150550	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150559	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150560	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150562	0.84[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17150566	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150575	1.00[ASN][1000 genomes]
rs17150580	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150594	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344821	1.00[JPT][hapmap]
rs17352924	1.00[JPT][hapmap]
rs17353329	1.00[JPT][hapmap]
rs17430936	1.00[JPT][hapmap]
rs35196485	1.00[AFR][1000 genomes]
rs60689247	0.86[ASN][1000 genomes]
rs7793461	1.00[ASW][hapmap]
rs7795283	1.00[JPT][hapmap]
rs7808944	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:77957600-77978600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:77958000-77979800	Weak transcription	Fetal Brain Female	brain
4	chr7:77964000-77981800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:77970200-77978400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:77970600-77978400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:77974000-77980000	Weak transcription	Pancreas	Pancrea
9	chr7:77975000-77978600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:77975600-77992000	Weak transcription	Ovary	ovary
11	chr7:77976000-77979000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:77976000-77979600	Weak transcription	Fetal Intestine Small	intestine
13	chr7:77976800-77980600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:77977200-77978800	Weak transcription	Brain Angular Gyrus	brain
15	chr7:77977400-77978800	Weak transcription	Fetal Heart	heart
16	chr7:77977400-77979600	Weak transcription	Brain Substantia Nigra	brain
17	chr7:77977400-77979800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:77977600-77978600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:77977800-77984800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links