Variant report

Variant	rs17150545
Chromosome Location	chr7:77963011-77963012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10464619	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885929	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885940	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885947	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150527	0.82[ASN][1000 genomes]
rs17150550	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150559	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150560	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150562	0.86[ASN][1000 genomes]
rs17150566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150575	1.00[ASN][1000 genomes]
rs17150580	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150594	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60689247	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77946200-77976000	Weak transcription	Aorta	Aorta
2	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:77956800-77964400	Weak transcription	Ovary	ovary
4	chr7:77957000-77975800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:77957200-77973200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:77957200-77975800	Weak transcription	Brain Substantia Nigra	brain
7	chr7:77957600-77974800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:77957600-77976000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:77957600-77978600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:77958000-77979800	Weak transcription	Fetal Brain Female	brain
11	chr7:77961400-77964200	Enhancers	Fetal Intestine Small	intestine
12	chr7:77962800-77963200	Enhancers	Fetal Intestine Large	intestine
13	chr7:77962800-77964200	Enhancers	HepG2	liver
14	chr7:77963000-77963200	Enhancers	Esophagus	oesophagus
15	chr7:77963000-77963200	Enhancers	Pancreas	Pancrea
16	chr7:77963000-77963600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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