Variant report

Variant	rs17150566
Chromosome Location	chr7:77976323-77976324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10464619	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485890	1.00[JPT][hapmap]
rs12670360	1.00[JPT][hapmap]
rs16885929	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885940	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885947	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147824	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150527	0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17150545	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150550	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150559	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150560	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150562	0.84[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17150575	1.00[ASN][1000 genomes]
rs17150580	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150594	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344821	1.00[JPT][hapmap]
rs17352924	1.00[JPT][hapmap]
rs17353329	1.00[JPT][hapmap]
rs17430936	1.00[JPT][hapmap]
rs60689247	0.86[ASN][1000 genomes]
rs7795283	1.00[JPT][hapmap]
rs7808944	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:77957600-77978600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:77958000-77979800	Weak transcription	Fetal Brain Female	brain
4	chr7:77964000-77981800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:77970200-77978400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:77970600-77978400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:77973600-77977400	Enhancers	Fetal Heart	heart
9	chr7:77974000-77980000	Weak transcription	Pancreas	Pancrea
10	chr7:77975000-77978600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:77975400-77976800	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:77975600-77992000	Weak transcription	Ovary	ovary
13	chr7:77975800-77977200	Enhancers	Brain Angular Gyrus	brain
14	chr7:77975800-77977400	Enhancers	Brain Substantia Nigra	brain
15	chr7:77976000-77976600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr7:77976000-77976800	Enhancers	Aorta	Aorta
17	chr7:77976000-77976800	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:77976000-77979000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:77976000-77979600	Weak transcription	Fetal Intestine Small	intestine
20	chr7:77976200-77976400	Enhancers	Colon Smooth Muscle	Colon

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