Variant report

Variant	rs17344821
Chromosome Location	chr7:77954744-77954745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16885940	1.00[JPT][hapmap]
rs16885947	1.00[JPT][hapmap]
rs17147824	1.00[JPT][hapmap]
rs17150527	1.00[JPT][hapmap]
rs17150550	1.00[JPT][hapmap]
rs17150559	1.00[JPT][hapmap]
rs17150560	1.00[JPT][hapmap]
rs17150562	1.00[JPT][hapmap]
rs17150566	1.00[JPT][hapmap]
rs17150575	1.00[AFR][1000 genomes]
rs17150580	1.00[JPT][hapmap]
rs17150594	1.00[JPT][hapmap]
rs17352924	1.00[JPT][hapmap]
rs17430936	1.00[JPT][hapmap]
rs7795283	1.00[JPT][hapmap]
rs7808944	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1034622	chr7:77579053-77958967	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv538984	chr7:77579053-77958967	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv532146	chr7:77612319-77958966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77946200-77976000	Weak transcription	Aorta	Aorta
2	chr7:77951800-77955800	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:77952800-77954800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:77953000-77955400	Weak transcription	Osteobl	bone
5	chr7:77953200-77955000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:77953600-77956200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:77953600-77957800	Weak transcription	Fetal Brain Male	brain
8	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:77954000-77956200	Weak transcription	Brain Angular Gyrus	brain
10	chr7:77954400-77955200	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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