Variant report

Variant	rs11971039
Chromosome Location	chr7:78027630-78027631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10953544	0.91[AFR][1000 genomes]
rs11764975	0.82[AFR][1000 genomes]
rs11767241	0.82[AFR][1000 genomes]
rs11982997	0.84[AFR][1000 genomes]
rs11983137	0.93[AFR][1000 genomes]
rs6955103	0.93[AFR][1000 genomes]
rs7797465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
3	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:78023200-78028000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:78023600-78028600	Weak transcription	Ovary	ovary
6	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:78025000-78028800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:78025600-78028000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:78026000-78028400	Weak transcription	Fetal Heart	heart
10	chr7:78026600-78029000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr7:78026800-78029000	Enhancers	Brain Substantia Nigra	brain
12	chr7:78026800-78029400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:78026800-78031400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:78027000-78027800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr7:78027200-78029200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:78027400-78027800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr7:78027400-78028000	Enhancers	HSMMtube	muscle
18	chr7:78027400-78029000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:78027400-78030000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:78027600-78028400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr7:78027600-78028400	Weak transcription	Brain Anterior Caudate	brain
22	chr7:78027600-78028800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:78027600-78029200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:78027600-78032200	Enhancers	HUES64 Cell Line	embryonic stem cell

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