Variant report

Variant	rs6976589
Chromosome Location	chr7:22004290-22004291
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11764432	1.00[ASN][1000 genomes]
rs11976853	1.00[ASN][1000 genomes]
rs11976877	1.00[ASN][1000 genomes]
rs11979337	1.00[ASN][1000 genomes]
rs56691898	0.80[AMR][1000 genomes]
rs56928609	1.00[ASN][1000 genomes]
rs57179549	1.00[ASN][1000 genomes]
rs57384443	1.00[ASN][1000 genomes]
rs57862761	1.00[ASN][1000 genomes]
rs6959045	0.80[AMR][1000 genomes]
rs73268713	0.80[AMR][1000 genomes]
rs73268727	0.80[AMR][1000 genomes]
rs73268775	1.00[ASN][1000 genomes]
rs73270819	1.00[ASN][1000 genomes]
rs73270834	1.00[ASN][1000 genomes]
rs73270856	1.00[ASN][1000 genomes]
rs73270860	1.00[ASN][1000 genomes]
rs73270868	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
3	nsv1029966	chr7:21999316-22028266	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22003200-22008600	Enhancers	Primary B cells from cord blood	blood
2	chr7:22003400-22005800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:22003600-22004400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:22003800-22005000	Weak transcription	GM12878-XiMat	blood
5	chr7:22004000-22005600	Enhancers	Stomach Smooth Muscle	stomach
6	chr7:22004000-22005800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:22004000-22009200	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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