Variant report

Variant	rs6977622
Chromosome Location	chr7:3022812-3022813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10244865	1.00[EUR][1000 genomes]
rs11972536	1.00[EUR][1000 genomes]
rs1317753	1.00[EUR][1000 genomes]
rs2396974	1.00[EUR][1000 genomes]
rs28493200	1.00[EUR][1000 genomes]
rs28507235	1.00[EUR][1000 genomes]
rs41327044	1.00[EUR][1000 genomes]
rs41339146	1.00[EUR][1000 genomes]
rs41367746	1.00[EUR][1000 genomes]
rs41377947	1.00[EUR][1000 genomes]
rs41435148	1.00[EUR][1000 genomes]
rs41447249	1.00[EUR][1000 genomes]
rs41455246	1.00[EUR][1000 genomes]
rs41477951	1.00[EUR][1000 genomes]
rs4310111	1.00[EUR][1000 genomes]
rs4624930	1.00[EUR][1000 genomes]
rs57451179	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57688543	1.00[EUR][1000 genomes]
rs59566518	1.00[EUR][1000 genomes]
rs6952412	1.00[EUR][1000 genomes]
rs6957807	1.00[EUR][1000 genomes]
rs6965863	1.00[EUR][1000 genomes]
rs6968350	1.00[EUR][1000 genomes]
rs6971650	1.00[EUR][1000 genomes]
rs6977383	1.00[EUR][1000 genomes]
rs6978186	1.00[EUR][1000 genomes]
rs73292766	1.00[EUR][1000 genomes]
rs746009	1.00[EUR][1000 genomes]
rs7784716	1.00[EUR][1000 genomes]
rs7784813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7785010	1.00[EUR][1000 genomes]
rs7802270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1025727	chr7:2938301-3064008	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3019000-3026000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr7:3019200-3024800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr7:3019200-3035800	Weak transcription	Gastric	stomach
4	chr7:3019400-3023800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:3019800-3049000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:3020000-3025600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:3020000-3025800	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr7:3020000-3026800	Weak transcription	Fetal Intestine Small	intestine
9	chr7:3020200-3024000	Enhancers	Primary hematopoietic stem cells	blood
10	chr7:3020600-3023800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:3020600-3023800	Weak transcription	Esophagus	oesophagus
12	chr7:3020600-3024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:3020600-3025600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:3020600-3033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:3021000-3026800	Genic enhancers	Primary B cells from peripheral blood	blood
16	chr7:3021200-3027800	Weak transcription	Spleen	Spleen
17	chr7:3022000-3023800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:3022000-3024000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:3022000-3024000	Enhancers	Thymus	Thymus
20	chr7:3022200-3023000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:3022200-3023800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr7:3022200-3024000	Enhancers	Primary B cells from cord blood	blood
23	chr7:3022200-3024000	Enhancers	Fetal Thymus	thymus
24	chr7:3022200-3025800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr7:3022600-3023400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr7:3022600-3024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:3022600-3025800	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr7:3022800-3023000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:3022800-3023800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr7:3022800-3024000	Enhancers	Primary T cells from cord blood	blood
31	chr7:3022800-3026000	Weak transcription	GM12878-XiMat	blood
32	chr7:3022800-3032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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