Variant report

Variant	rs7784813
Chromosome Location	chr7:3033505-3033506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10244865	1.00[EUR][1000 genomes]
rs11972536	1.00[EUR][1000 genomes]
rs1317753	1.00[EUR][1000 genomes]
rs2396974	1.00[EUR][1000 genomes]
rs28493200	1.00[EUR][1000 genomes]
rs28507235	1.00[EUR][1000 genomes]
rs41327044	1.00[EUR][1000 genomes]
rs41339146	1.00[EUR][1000 genomes]
rs41367746	1.00[EUR][1000 genomes]
rs41377947	1.00[EUR][1000 genomes]
rs41435148	1.00[EUR][1000 genomes]
rs41447249	1.00[EUR][1000 genomes]
rs41455246	1.00[EUR][1000 genomes]
rs41477951	1.00[EUR][1000 genomes]
rs4310111	1.00[EUR][1000 genomes]
rs4624930	1.00[EUR][1000 genomes]
rs57451179	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57688543	1.00[EUR][1000 genomes]
rs59566518	1.00[EUR][1000 genomes]
rs6952412	1.00[EUR][1000 genomes]
rs6957807	1.00[EUR][1000 genomes]
rs6965863	1.00[EUR][1000 genomes]
rs6968350	1.00[EUR][1000 genomes]
rs6971650	1.00[EUR][1000 genomes]
rs6977383	1.00[EUR][1000 genomes]
rs6977622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6978186	1.00[EUR][1000 genomes]
rs73292766	1.00[EUR][1000 genomes]
rs746009	1.00[EUR][1000 genomes]
rs7784716	1.00[EUR][1000 genomes]
rs7785010	1.00[EUR][1000 genomes]
rs7802270	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1025727	chr7:2938301-3064008	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3019200-3035800	Weak transcription	Gastric	stomach
2	chr7:3019800-3049000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:3023800-3049600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:3025600-3043600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:3025800-3045800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:3026400-3033800	Weak transcription	Thymus	Thymus
7	chr7:3027000-3035600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:3027400-3039000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:3028200-3033600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:3030400-3048600	Strong transcription	Primary T cells from cord blood	blood
11	chr7:3031400-3033600	Weak transcription	Spleen	Spleen
12	chr7:3031800-3038600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr7:3032000-3034400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:3032000-3036000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:3032200-3034600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr7:3032200-3035000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:3032400-3035600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:3032600-3044200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr7:3032800-3034200	Enhancers	Esophagus	oesophagus
20	chr7:3032800-3034600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr7:3032800-3035400	Strong transcription	Primary B cells from cord blood	blood
22	chr7:3033000-3033800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:3033000-3034200	Enhancers	Duodenum Mucosa	Duodenum
24	chr7:3033000-3034200	Enhancers	Stomach Mucosa	stomach
25	chr7:3033000-3037400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr7:3033200-3033800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:3033200-3037200	ZNF genes & repeats	GM12878-XiMat	blood
28	chr7:3033200-3053200	Weak transcription	Fetal Thymus	thymus
29	chr7:3033400-3033600	Flanking Active TSS	NHEK	skin
30	chr7:3033400-3035400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr7:3033400-3037600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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