Variant report

Variant	rs6977818
Chromosome Location	chr7:111831214-111831215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:111806337..111808090-chr7:111829866..111832527,3	MCF-7	breast:
2	chr7:111830297..111832392-chr7:112089382..112092180,2	K562	blood:
3	chr7:111824683..111826311-chr7:111830229..111832204,2	K562	blood:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2729540	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111814000-111836000	Weak transcription	Fetal Brain Female	brain
2	chr7:111817400-111835800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:111823200-111843200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:111823400-111839000	Weak transcription	Fetal Lung	lung
5	chr7:111825000-111832600	Enhancers	Brain Hippocampus Middle	brain
6	chr7:111826000-111839000	Weak transcription	NHLF	lung
7	chr7:111826000-111842200	Enhancers	HUVEC	blood vessel
8	chr7:111826200-111831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:111826200-111832400	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:111826200-111832800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:111826800-111831400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:111827000-111837000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:111827600-111832000	Enhancers	Ovary	ovary
14	chr7:111827600-111832200	Weak transcription	A549	lung
15	chr7:111827800-111835600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:111828400-111832600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr7:111828400-111833000	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:111828600-111831800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:111828800-111831800	Enhancers	Brain Substantia Nigra	brain
20	chr7:111829200-111842600	Weak transcription	Psoas Muscle	Psoas
21	chr7:111830000-111834600	Enhancers	NHEK	skin
22	chr7:111830200-111831800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:111830200-111831800	Enhancers	Right Ventricle	heart
24	chr7:111830200-111834200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:111830200-111834600	Enhancers	HMEC	breast
26	chr7:111830400-111831800	Enhancers	HepG2	liver
27	chr7:111830400-111832000	Enhancers	Left Ventricle	heart
28	chr7:111830600-111832000	Enhancers	Lung	lung
29	chr7:111830600-111832200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:111831000-111831400	Enhancers	Liver	Liver
31	chr7:111831000-111831600	Weak transcription	Adipose Nuclei	Adipose
32	chr7:111831200-111831400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:111831200-111831600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:111831200-111831600	Weak transcription	Brain Anterior Caudate	brain
35	chr7:111831200-111831800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:111831200-111832000	Enhancers	Right Atrium	heart
37	chr7:111831200-111833800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:111831200-111837400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links