The 2.0 version of rSNPBase

Variant report

Variant rs2729540
Chromosome Location chr7:111829933-111829934
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:111814000-111836000 Weak transcription Fetal Brain Female brain
2 chr7:111817400-111835800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr7:111820800-111831200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr7:111823200-111843200 Weak transcription Stomach Smooth Muscle stomach
5 chr7:111823400-111839000 Weak transcription Fetal Lung lung
6 chr7:111825000-111832600 Enhancers Brain Hippocampus Middle brain
7 chr7:111826000-111830400 Weak transcription HepG2 liver
8 chr7:111826000-111830800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr7:111826000-111839000 Weak transcription NHLF lung
10 chr7:111826000-111842200 Enhancers HUVEC blood vessel
11 chr7:111826200-111830200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr7:111826200-111830800 Weak transcription Adipose Nuclei Adipose
13 chr7:111826200-111831000 Weak transcription Liver Liver
14 chr7:111826200-111831200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr7:111826200-111831600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr7:111826200-111832400 Weak transcription Colon Smooth Muscle Colon
17 chr7:111826200-111832800 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr7:111826400-111830200 Weak transcription Lung lung
19 chr7:111826400-111830200 Weak transcription Right Ventricle heart
20 chr7:111826400-111830400 Weak transcription Left Ventricle heart
21 chr7:111826800-111830000 Weak transcription NHEK skin
22 chr7:111826800-111830200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr7:111826800-111831400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr7:111827000-111837000 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr7:111827600-111832000 Enhancers Ovary ovary
26 chr7:111827600-111832200 Weak transcription A549 lung
27 chr7:111827800-111835600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr7:111828400-111831200 Enhancers Brain Angular Gyrus brain
29 chr7:111828400-111832600 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr7:111828400-111833000 Enhancers Brain Cingulate Gyrus brain
31 chr7:111828600-111831800 Enhancers Brain Inferior Temporal Lobe brain
32 chr7:111828800-111831800 Enhancers Brain Substantia Nigra brain
33 chr7:111829200-111842600 Weak transcription Psoas Muscle Psoas
34 chr7:111829400-111830200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr7:111829600-111830000 Weak transcription Brain Anterior Caudate brain
36 chr7:111829800-111830000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr7:111829800-111830000 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015