The 2.0 version of rSNPBase

Variant report

Variant rs2729548
Chromosome Location chr7:111817242-111817243
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:111802600-111825200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr7:111803000-111825400 Weak transcription NHEK skin
3 chr7:111803600-111820400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr7:111803600-111825400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr7:111804800-111817400 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr7:111808800-111822800 Weak transcription Pancreas Pancrea
7 chr7:111812000-111824200 Enhancers Brain Substantia Nigra brain
8 chr7:111812400-111817400 Enhancers HUVEC blood vessel
9 chr7:111812400-111819400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr7:111812400-111822400 Enhancers Brain Anterior Caudate brain
11 chr7:111812600-111818800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr7:111813800-111819200 Weak transcription Stomach Smooth Muscle stomach
13 chr7:111813800-111820400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr7:111813800-111821200 Enhancers Brain Hippocampus Middle brain
15 chr7:111814000-111819400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr7:111814000-111819400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr7:111814000-111820200 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr7:111814000-111820200 Weak transcription Colon Smooth Muscle Colon
19 chr7:111814000-111823800 Weak transcription Liver Liver
20 chr7:111814000-111836000 Weak transcription Fetal Brain Female brain
21 chr7:111814200-111820200 Weak transcription Right Atrium heart
22 chr7:111814400-111819600 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr7:111814400-111820200 Weak transcription Left Ventricle heart
24 chr7:111814400-111824200 Weak transcription Adipose Nuclei Adipose
25 chr7:111814600-111819400 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr7:111814600-111820200 Weak transcription Right Ventricle heart
27 chr7:111815800-111821200 Enhancers Brain Inferior Temporal Lobe brain
28 chr7:111816000-111818600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
29 chr7:111816000-111822800 Enhancers Brain Cingulate Gyrus brain
30 chr7:111816200-111817400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr7:111816200-111818600 Enhancers HepG2 liver
32 chr7:111816600-111820200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr7:111816800-111817600 Enhancers Pancreatic Islets Pancreatic Islet
34 chr7:111816800-111818200 Enhancers H9 Cell Line embryonic stem cell
35 chr7:111817000-111817400 Weak transcription Ovary ovary
36 chr7:111817000-111817600 Enhancers HUES48 Cell Line embryonic stem cell
37 chr7:111817000-111817800 Enhancers HUES6 Cell Line embryonic stem cell
38 chr7:111817000-111818800 Enhancers iPS-20b Cell Line embryonic stem cell
39 chr7:111817200-111817400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr7:111817200-111817600 Enhancers iPS-15b Cell Line embryonic stem cell
41 chr7:111817200-111818200 Weak transcription Psoas Muscle Psoas
42 chr7:111817200-111826200 Enhancers Brain Angular Gyrus brain

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Last update: Aug 31, 2015