Variant report

Variant	rs6977974
Chromosome Location	chr7:12323936-12323937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12319256..12322046-chr7:12323185..12326325,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10224863	1.00[EUR][1000 genomes]
rs10232185	1.00[EUR][1000 genomes]
rs10232837	1.00[EUR][1000 genomes]
rs10233068	1.00[EUR][1000 genomes]
rs10245998	1.00[EUR][1000 genomes]
rs10246117	1.00[EUR][1000 genomes]
rs10250410	1.00[EUR][1000 genomes]
rs10250861	1.00[EUR][1000 genomes]
rs10259433	1.00[EUR][1000 genomes]
rs10266459	1.00[EUR][1000 genomes]
rs10266698	1.00[EUR][1000 genomes]
rs10267494	1.00[EUR][1000 genomes]
rs10270541	1.00[EUR][1000 genomes]
rs10277600	1.00[EUR][1000 genomes]
rs1072262	1.00[EUR][1000 genomes]
rs13328318	1.00[EUR][1000 genomes]
rs1595012	1.00[EUR][1000 genomes]
rs16877307	1.00[EUR][1000 genomes]
rs17165685	1.00[EUR][1000 genomes]
rs17165707	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17165709	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17166002	1.00[EUR][1000 genomes]
rs28432320	1.00[EUR][1000 genomes]
rs28451348	1.00[EUR][1000 genomes]
rs28465410	1.00[EUR][1000 genomes]
rs57209188	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57259822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57308211	1.00[EUR][1000 genomes]
rs57698857	1.00[EUR][1000 genomes]
rs57742006	1.00[EUR][1000 genomes]
rs57812376	1.00[EUR][1000 genomes]
rs58059818	1.00[EUR][1000 genomes]
rs58476665	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58749049	1.00[EUR][1000 genomes]
rs58818488	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58954316	1.00[EUR][1000 genomes]
rs59080097	1.00[EUR][1000 genomes]
rs59769625	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60817474	1.00[EUR][1000 genomes]
rs61411483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942432	0.82[AFR][1000 genomes]
rs6947477	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6968985	1.00[EUR][1000 genomes]
rs6978326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73288165	1.00[EUR][1000 genomes]
rs73288192	1.00[EUR][1000 genomes]
rs73288195	1.00[EUR][1000 genomes]
rs73290105	1.00[EUR][1000 genomes]
rs73290106	1.00[EUR][1000 genomes]
rs73290188	1.00[EUR][1000 genomes]
rs73290454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292961	1.00[EUR][1000 genomes]
rs73292962	1.00[EUR][1000 genomes]
rs73292964	1.00[EUR][1000 genomes]
rs73292965	1.00[EUR][1000 genomes]
rs73295078	1.00[EUR][1000 genomes]
rs73296310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297023	1.00[EUR][1000 genomes]
rs73297098	1.00[EUR][1000 genomes]
rs73298535	1.00[EUR][1000 genomes]
rs73300543	1.00[EUR][1000 genomes]
rs73301022	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73301040	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73302462	1.00[EUR][1000 genomes]
rs73679942	1.00[EUR][1000 genomes]
rs7791110	1.00[EUR][1000 genomes]
rs7801599	1.00[EUR][1000 genomes]
rs7809959	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12317800-12329400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:12323600-12324000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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