Variant report

Variant	rs59080097
Chromosome Location	chr7:12201583-12201584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10241146	1.00[EUR][1000 genomes]
rs10251420	1.00[EUR][1000 genomes]
rs10262993	1.00[EUR][1000 genomes]
rs10263331	1.00[EUR][1000 genomes]
rs10266698	1.00[EUR][1000 genomes]
rs10274501	1.00[EUR][1000 genomes]
rs1072262	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979594	1.00[EUR][1000 genomes]
rs1595012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877307	1.00[EUR][1000 genomes]
rs17165685	1.00[EUR][1000 genomes]
rs17165707	1.00[EUR][1000 genomes]
rs17165709	1.00[EUR][1000 genomes]
rs28471043	1.00[EUR][1000 genomes]
rs57209188	1.00[EUR][1000 genomes]
rs57308211	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57698857	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57742006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57812376	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58476665	1.00[EUR][1000 genomes]
rs58749049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58954316	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59769625	1.00[EUR][1000 genomes]
rs60817474	1.00[EUR][1000 genomes]
rs61411483	1.00[EUR][1000 genomes]
rs6947477	1.00[EUR][1000 genomes]
rs6977974	1.00[EUR][1000 genomes]
rs6978326	1.00[EUR][1000 genomes]
rs73289387	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291081	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291082	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292961	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292962	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292964	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292965	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73295078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297098	1.00[EUR][1000 genomes]
rs73301022	1.00[EUR][1000 genomes]
rs73301040	1.00[EUR][1000 genomes]
rs7786770	1.00[EUR][1000 genomes]
rs7786784	1.00[EUR][1000 genomes]
rs7801599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv887627	chr7:12178793-12227892	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv887628	chr7:12186502-12227892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12198600-12201600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:12198600-12208200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:12201000-12202200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:12201000-12202600	Enhancers	NH-A	brain
5	chr7:12201000-12202800	Enhancers	Hela-S3	cervix
6	chr7:12201200-12201800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:12201200-12201800	Enhancers	A549	lung
8	chr7:12201400-12202400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links