Variant report

Variant	rs73289387
Chromosome Location	chr7:12174047-12174048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10241146	1.00[EUR][1000 genomes]
rs10251420	1.00[EUR][1000 genomes]
rs10262993	1.00[EUR][1000 genomes]
rs10263331	1.00[EUR][1000 genomes]
rs10266698	1.00[EUR][1000 genomes]
rs10274501	1.00[EUR][1000 genomes]
rs1072262	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979594	1.00[EUR][1000 genomes]
rs13237543	0.90[AFR][1000 genomes]
rs1595012	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877307	1.00[EUR][1000 genomes]
rs17165685	1.00[EUR][1000 genomes]
rs17165707	1.00[EUR][1000 genomes]
rs17165709	1.00[EUR][1000 genomes]
rs28471043	1.00[EUR][1000 genomes]
rs57209188	1.00[EUR][1000 genomes]
rs57308211	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57698857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57742006	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57812376	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58476665	1.00[EUR][1000 genomes]
rs58749049	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58954316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59080097	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60817474	1.00[EUR][1000 genomes]
rs73291081	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292964	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292965	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73295078	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297023	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297098	1.00[EUR][1000 genomes]
rs73301022	1.00[EUR][1000 genomes]
rs73301040	1.00[EUR][1000 genomes]
rs7786770	1.00[EUR][1000 genomes]
rs7786784	1.00[EUR][1000 genomes]
rs7801599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12170800-12176400	Weak transcription	Hela-S3	cervix
2	chr7:12173800-12174800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:12174000-12176400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links