Variant report

Variant	rs6978182
Chromosome Location	chr7:83631923-83631924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10250165	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250543	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253563	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253580	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261519	0.82[EUR][1000 genomes]
rs11978893	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979659	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13241380	0.90[CEU][hapmap];0.82[CHB][hapmap];0.99[EUR][1000 genomes]
rs1404477	0.82[EUR][1000 genomes]
rs1404478	0.82[EUR][1000 genomes]
rs1404479	0.99[EUR][1000 genomes]
rs1404480	0.82[EUR][1000 genomes]
rs2030679	0.90[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3735513	0.90[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735514	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735515	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801597	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801598	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801599	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801602	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3801603	0.90[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs6944512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959932	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977169	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804122	0.89[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3352967	chr7:83626144-83684599	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach
2	chr7:83591000-83633800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:83591200-83634200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:83591200-83638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:83591200-83654600	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:83606000-83654000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:83606200-83643200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:83609800-83650400	Weak transcription	NHLF	lung
9	chr7:83610200-83642200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:83610200-83673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:83622800-83643200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:83623600-83634200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:83624400-83651600	Weak transcription	Fetal Intestine Small	intestine
14	chr7:83625000-83646800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:83625400-83638200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:83625600-83633800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:83625600-83643600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:83626000-83650600	Weak transcription	NH-A	brain
19	chr7:83626400-83638600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:83626600-83636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:83626800-83638800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:83627000-83636600	Weak transcription	Adipose Nuclei	Adipose
23	chr7:83627200-83632000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:83627800-83633200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:83627800-83633800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:83628000-83632600	Weak transcription	Fetal Lung	lung
27	chr7:83628000-83634200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:83629400-83632600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:83629400-83643600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:83630200-83633200	Weak transcription	NHDF-Ad	bronchial
31	chr7:83631000-83632200	Enhancers	NHEK	skin
32	chr7:83631000-83632600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
33	chr7:83631200-83632000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:83631200-83632000	Enhancers	HMEC	breast
35	chr7:83631200-83632200	Enhancers	Fetal Heart	heart
36	chr7:83631200-83632800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr7:83631600-83632000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
38	chr7:83631800-83632200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links