Variant report

Variant	rs6980004
Chromosome Location	chr7:137369402-137369403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3800627	1.00[EUR][1000 genomes]
rs56076414	1.00[EUR][1000 genomes]
rs6947666	1.00[CEU][hapmap]
rs6958415	0.84[AFR][1000 genomes]
rs7785935	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137355800-137370600	Weak transcription	Aorta	Aorta
2	chr7:137364800-137370000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:137366800-137370400	Weak transcription	Right Atrium	heart
4	chr7:137366800-137371800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:137367000-137370400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:137368000-137372400	Weak transcription	HMEC	breast
7	chr7:137368200-137369600	Weak transcription	HSMMtube	muscle
8	chr7:137368200-137369800	Weak transcription	NHDF-Ad	bronchial
9	chr7:137368400-137369600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:137368400-137369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:137368400-137369600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:137368400-137369600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:137368400-137369800	Genic enhancers	Muscle Satellite Cultured Cells	--
14	chr7:137368400-137369800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:137368400-137369800	Weak transcription	HSMM	muscle
16	chr7:137368400-137370000	Weak transcription	Osteobl	bone
17	chr7:137368400-137370800	Weak transcription	NH-A	brain
18	chr7:137368600-137369800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:137368600-137369800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:137368800-137369800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:137369200-137370800	Enhancers	Fetal Brain Male	brain
22	chr7:137369400-137369600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:137369400-137370400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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