Variant report

Variant	rs6947666
Chromosome Location	chr7:137393735-137393736
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10227387	1.00[ASN][1000 genomes]
rs10248705	1.00[CHB][hapmap]
rs10269622	1.00[CHB][hapmap]
rs10270098	1.00[CHB][hapmap]
rs10273283	1.00[CHB][hapmap]
rs28419330	1.00[ASN][1000 genomes]
rs3778801	1.00[ASN][1000 genomes]
rs3800625	0.88[ASN][1000 genomes]
rs3800627	0.88[ASN][1000 genomes]
rs3800632	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs58290352	1.00[ASN][1000 genomes]
rs58813961	0.94[ASN][1000 genomes]
rs60207538	1.00[ASN][1000 genomes]
rs6943970	0.86[EUR][1000 genomes]
rs6980004	1.00[CEU][hapmap]
rs7458662	1.00[CHB][hapmap]
rs7459099	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137385000-137398400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:137388800-137399600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:137390000-137400000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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