Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10227387	1.00[ASN][1000 genomes]
rs10268869	1.00[AMR][1000 genomes]
rs10269622	1.00[AMR][1000 genomes]
rs10270098	1.00[AMR][1000 genomes]
rs10273283	1.00[AMR][1000 genomes]
rs28419330	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28633970	1.00[AMR][1000 genomes]
rs28735762	1.00[AMR][1000 genomes]
rs3778801	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3800625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3800627	0.88[ASN][1000 genomes]
rs3800632	0.94[ASN][1000 genomes]
rs58290352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58813961	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6947666	1.00[ASN][1000 genomes]
rs73730095	1.00[AMR][1000 genomes]
rs73730098	1.00[AMR][1000 genomes]
rs73731004	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7458662	1.00[AMR][1000 genomes]
rs7459099	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137385000-137398400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:137388800-137399600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:137389600-137390800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:137390000-137400000	Weak transcription	HSMM	muscle
5	chr7:137390400-137392600	Weak transcription	Ovary	ovary

Quick Search: