Variant report

Variant	rs10227387
Chromosome Location	chr7:137388482-137388483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10248705	1.00[AMR][1000 genomes]
rs28419330	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3778801	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3800625	0.88[ASN][1000 genomes]
rs3800627	0.88[ASN][1000 genomes]
rs3800632	0.94[ASN][1000 genomes]
rs58290352	1.00[ASN][1000 genomes]
rs58813961	0.94[ASN][1000 genomes]
rs60207538	1.00[ASN][1000 genomes]
rs61140981	1.00[AMR][1000 genomes]
rs6947666	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137382200-137389200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:137385000-137398400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:137388000-137388600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:137388200-137388800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:137388200-137389800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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