Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62607010..62609154-chr7:137377166..137379355,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10227387	0.88[ASN][1000 genomes]
rs10268869	1.00[AMR][1000 genomes]
rs10269622	1.00[AMR][1000 genomes]
rs10270098	1.00[AMR][1000 genomes]
rs10273283	1.00[AMR][1000 genomes]
rs28419330	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28633970	1.00[AMR][1000 genomes]
rs28735762	1.00[AMR][1000 genomes]
rs3778801	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3800627	1.00[ASN][1000 genomes]
rs3800632	0.82[ASN][1000 genomes]
rs56076414	0.88[ASN][1000 genomes]
rs58290352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58813961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60053545	0.82[AFR][1000 genomes]
rs60207538	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6947666	0.88[ASN][1000 genomes]
rs73730092	0.82[AFR][1000 genomes]
rs73730095	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730098	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73731004	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7458662	1.00[AMR][1000 genomes]
rs7459099	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137370400-137380600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137370800-137384600	Weak transcription	Fetal Brain Female	brain
3	chr7:137373400-137380800	Weak transcription	NH-A	brain
4	chr7:137373800-137379200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:137374000-137379200	Weak transcription	Osteobl	bone
6	chr7:137374000-137387400	Weak transcription	Aorta	Aorta
7	chr7:137374400-137378000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:137374400-137380600	Weak transcription	HSMMtube	muscle
9	chr7:137374800-137379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:137374800-137379800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:137375800-137378400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:137375800-137382400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:137376000-137378000	Enhancers	HSMM	muscle
14	chr7:137377600-137379400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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