Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10248705	1.00[ASN][1000 genomes]
rs10268869	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10269622	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10270098	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10273283	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1424368	0.83[ASN][1000 genomes]
rs1424369	1.00[ASN][1000 genomes]
rs28419330	1.00[AMR][1000 genomes]
rs28633970	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28735762	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3778801	1.00[AMR][1000 genomes]
rs3800625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58290352	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58813961	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60053545	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60207538	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61140981	1.00[ASN][1000 genomes]
rs73730089	0.83[ASN][1000 genomes]
rs73730092	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73730095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73730096	0.87[ASN][1000 genomes]
rs73730098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7458662	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7459099	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137355800-137370600	Weak transcription	Aorta	Aorta
2	chr7:137356400-137365800	Weak transcription	HSMM	muscle
3	chr7:137357000-137366400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:137357000-137367600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:137357400-137365600	Weak transcription	Osteobl	bone
6	chr7:137359200-137365600	Weak transcription	HSMMtube	muscle
7	chr7:137360200-137365800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:137360800-137366400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:137361800-137364000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:137363400-137365600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:137363400-137365800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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